WEB-based GEne SeT AnaLysis Toolkit
 
Translating gene lists into biological insights...
 


User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID.
The second row lists the following statistics:
Finally, genes in the pathway are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:KEGG pathway       Name:Shigellosis       ID:05131
C=61; O=2; E=0.04; R=45.61; rawP=0.0009; adjP=0.0019
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000158195 NA WASF2 WAS protein family, member 2 10163 ENSG00000158195
2  ENSG00000241685 NA ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa 10552 ENSG00000241685


Database:KEGG pathway       Name:Bacterial invasion of epithelial cells       ID:05100
C=70; O=2; E=0.05; R=39.75; rawP=0.0012; adjP=0.0019
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000158195 NA WASF2 WAS protein family, member 2 10163 ENSG00000158195
2  ENSG00000241685 NA ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa 10552 ENSG00000241685


Database:KEGG pathway       Name:Endocytosis       ID:04144
C=201; O=3; E=0.14; R=20.76; rawP=0.0004; adjP=0.0019
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000166949 NA SMAD3 SMAD family member 3 4088 ENSG00000166949
2  ENSG00000183020 NA AP2A2 adaptor-related protein complex 2, alpha 2 subunit 161 ENSG00000183020
3  ENSG00000186635 NA ARAP1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 116985 ENSG00000186635


Database:KEGG pathway       Name:Adherens junction       ID:04520
C=73; O=2; E=0.05; R=38.11; rawP=0.0013; adjP=0.0019
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000158195 NA WASF2 WAS protein family, member 2 10163 ENSG00000158195
2  ENSG00000166949 NA SMAD3 SMAD family member 3 4088 ENSG00000166949


Database:KEGG pathway       Name:Fc gamma R-mediated phagocytosis       ID:04666
C=94; O=2; E=0.07; R=29.60; rawP=0.0021; adjP=0.0025
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000158195 NA WASF2 WAS protein family, member 2 10163 ENSG00000158195
2  ENSG00000241685 NA ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa 10552 ENSG00000241685


Database:KEGG pathway       Name:Regulation of actin cytoskeleton       ID:04810
C=213; O=2; E=0.15; R=13.06; rawP=0.0103; adjP=0.0103
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000158195 NA WASF2 WAS protein family, member 2 10163 ENSG00000158195
2  ENSG00000241685 NA ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa 10552 ENSG00000241685




WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).